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Contents


An overview of the human anatomy, step by step through each individual system. Learn the basics. Perfect for premed or biomedical engineering students. The current chapters are:

 1 • Introduction to anatomy & physiology   2 • Cell Biology & Histology 

1
Introduction to anatomy & physiology

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What is Anatomy?

The word is taken from the Ancient Greek ἀνατέμνειν, anatemnein:

  • ana, “separate, apart from“
  • temnein, “to cut up, cut open”

It is the study of the structure of living organisms. We study anatomy by:

  • Inspection - looking, palpation, auscultation, percussion
  • Dissection - cadavers, comparative anatomy
  • Exploratory Surgery
  • Imaging - X-ray, CT, Ultrasound, MRI, PET
  • Gross anatomy - structure that can be seen with the naked eye by surface observation, dissection, radiology
  • Histology - microscopic anatomy seen with a microscopy (light, electron etc.)

What is Physiology?

From the Ancient Greek, φύσιςλογία:

  • physis, “nature” or “origin”
  • logia, “study of”

In other words it is the study of the function of living things. It is possible to study physiology from scientific experimentation on the single cells to the whole organism.

Levels of Structure

Organism single complete individual
Organ System a group of organs that carry out a basic function of the organism
Organ 2 or more tissues types that work together to carry out a particular function
Tissue similar cells and cell products that form part of an organ and perform a particular function
Cell smallest units of a n organism that carry out all the functions of life (simplest living thing)
Organelle microscopic structure in a cell that carries out a particular function
Molecule two or more atoms joined together
Atom simplest form of an element
What is Human?
Donkey Domain
Kong Kingdom - Animalia
Puts Phylum - Chordata
Slippery Subphylum - Vertbrata
Condom Class - Mammalia
On Order - Primates
For Family - Hominidae
Good Genus - Homo
Sex Species - Homo sapiens
Our Chordate Characteristics Phylum
  1. Pharyngeal arches, a series of bulges that develop in the pharyngeal (throat) region. Pharyngeal pouches between these open and form gill slits in fish and amphibians, but not in humans.
  2. Tail that extends beyond the anus. The small bones of the coccyx (“tailbone”) remain after birth as a remnant of this.
  3. Notochord, a dorsal, flexible rod found only in the embryo.
  4. A dorsal hollow nerve cord, a column of nervous tissue that passes along the dorsal (upper) side of the body and has a central canal filled with fluid.

The first three of these features are found only in the embryo and fetus; only the nerve cord persists through life, as the spinal cord and brain. Other chordates include fish, lizards and birds.

Our Vertebrate Characteristics Subphylum

Other Vertebrate include fish, reptiles, birds, mammals.

  • A well developed brain and sensory organs.
  • An internal skeleton
  • A jointed vertebral column (spine).
  • A protective, usually bony enclosure for the brain, called the cranium.
Our Mammalian Characteristics Class

Less than 0.2% of animals are mammals. Other mammals include rats, horses, dogs and monkeys.

  • Mammary glands for nourishing the young with milk.
  • Hair, which serves in most mammals to retain body heat.
  • Endothermy, the ability to generate most body heat by metabolic means instead of having to warm up by basking in the sun or seeking other warm places.
  • Heterodonty, the possession of varied types of teeth (incisors, canines, premolars, and molars) specialized to puncture, cut, and grind food. These varied teeth break food into small pieces, making chemical digestion faster. Rapid digestion is necessary to support the high metabolic rate needed to maintain endothermic animals.
  • A single lower jawbone (mandible).
  • Three middle-ear bones (known colloquially as the hammer, anvil, and stirrup).
Our Primate Characteristics Order

Here are a few of our primate characteristics

  • Four upper and four lower incisors, the front cutting teeth.
  • A pair of functional clavicles (collarbones).
  • Only two mammary glands.
  • Forward-facing eyes with stereoscopic vision.
  • Flat nails in place of claws.
  • Opposable thumbs that can touch the fingertips, enabling the hand to encircle and grasp objects.
Our Hominid Characteristics Family

Here are a few of our hominid characteristics

  • Large brains, speech, tool making
  • Bipedalism

Variation

There are variations in both Anatomy & Physiology:

  • Normal variations
  • Pathological variations pathology = study of disease

The Reference Human

The reference man is defined as a healthy male 22 years old, weighing 70 kg (154 lb), living at a mean ambient (surrounding) temperature of 20°C, engaging in light physical activity, and consuming 2,800 kilocalories (kcal) per day.

The reference woman is the same except for a weight of 58 kg (128 lb) and an intake of 2,000 kcal/day.

Homeostasis

Homeostasis is the body’s ability to detect change, activate mechanisms that oppose it, and thereby maintain relatively stable internal conditions

Dynamic equilibrium – physiological values fluctuate very closely around an average value

Negative Feedback

Negative Feedback is a process in which the body senses a change and activates mechanisms that negate or reverse it:

  • Receptor: senses change
  • Integrating (control) centre: processes signals, e.g. compares to reference values and triggers effectors
  • Effector: carries out the corrective action
  • Feedback loop
Positive Feedback

Positive Feedback is a physiological change leads to even greater change in the same direction. Used when a rapid change is needed, e.g. childbirth

The Anatomical Position

This position provides a precise and standard frame of reference for anatomical description and dissection. The person stands erect with the feet flat on the floor, arms at the sides, and the palms, face, and eyes facing forward.

Anatomical Terms

Here are some general terms of anatomical relationships:

TERM DEFINITION
Anterior (ventral) Near the front
Posterior (dorsal) Near the back
Superior (cranial) Upward, or near the head
Inferior (caudal) Downward, or near the feet
Medial Toward the midline or median plane
Lateral Farther from the midline or median plane
Proximal Near a reference point
Distal Away from a reference point
Superficial Closer to the surface
Deep Farther from the surface
Median plane Divides body into equal right and left parts
Midsagittal plane Median plane
Sagittal plane Divides body into unequal right and left parts
Frontal (coronal) plane Divides body into equal or unequal anterior and posterior parts
Transverse plane Divides body into equal or unequal superior and inferior parts (cross sections)

Regions of the body

There are two main regions of the body:

  • The axial region consists of the head, neck (cervical region), and trunk. The trunk is further divided into the thoracic region above the diaphragm and the abdominal region below it.
  • The appendicular region of the body consists of the upper and lower limbs (also called appendages or extremities). The upper limb includes the arm (brachial region), forearm (antebrachial region), wrist (carpal region), hand (manual region), and fingers (digits). The lower limb includes the thigh (femoral region), leg (crural region), ankle (tarsal region), foot (pedal region), and toes (digits).

9 Regions of the Abdomen

Right hypochondriac Epigastric Left hypochondriac
Right Lumbar Umbilical Left lumbar
Right iliac Hypogastric Left iliac

To be completed soon



Written by Tobias Whetton

2
Cell Biology & Histology

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The word cell comes from the Latin “cella”, meaning small room. It was coined by Robert Hooke in his book Micrographia (1665), in which he compared the cork cells he saw through his microscope to the small rooms monks lived in.

The fundamental unit of life

All organisms are made of cells. The cells is the simplest collection of matter that can live. A cell is chemical system that is able to maintain its structure and reproduce. Cell structure is related to cell function. All cells derive from a common descending cell, stem cells.

Cell shapes & size

Cell structure is related to cell function

  • Prokaryotic: 1–10 μm
  • Eukaryotic: 10 - 100 μm (1μm = .001 mm)

Levels of organisation

  1. Atom - simplest form of an element
  2. Molecules (DNA) - two or more atoms held together
  3. Cellular - is the simplest collection of matter that can live. It has a chemical system that is able to maintain its structure and reproduce.
  4. Tissue - an ensemble of similar cells that together carry out a specific function.
  5. Organ - different tissue types that work together to carry out a particular function
  6. System - a group of organs that carry out a basic function of the organism
  7. Organism - a single complete individual

Human Body Tissues

Here are a few examples of tissues in a human body:

  • Connective Tissue
  • Skeletal Tissue - voluntary muscle
  • Epithelial Tissue - lines the internal organs and skin
  • Nervous Tissue - in the brain
  • Cardiac Muscle - in the heart
  • Smooth Muscle - in the intestines

Why cells are small?

They are small because they need to facilitate passive diffusion (no energy required). These molecules need to diffuse from a higher potential down a gradient to a lower potential.

Passive Diffusion
  • Gases: 02, C02, N2
  • Water: H20
  • Urea: NH2-CO-NH2
  • Small uncharged molecules: Ethanol

For effective diffusion: A small volume & a big surface area

How do we study cells

There are two main techniques:

  1. Microscopy: Light Microscopy (LM) and Electron Microscopy (EM) provide us with structural information
  2. Biochemistry: Cell fractionation and Ultra-Centrifugation provide us with functional information
Light Microscopy LM
  • 200nm resolution
  • 1000x magnification
  • Animal, Bacterial & Plant cells
  • Nucleus, organelles
Electron Microscopy EM
  • 0.5nm resolution
  • 10,000,000x magnification
  • Ultra-structural images
Cell Fractionation

This helps us to determine the functions of organelles & the interaction of molecules:

  • Homogenization: opens cells
  • Fractionation: separate different organelles

Cell Types

Common features in all cells include:

  • Plasma membrane – outer layer
  • Semi-fluid substance – cytosol
  • Chromosomes – carry genes
  • Ribosomes – make proteins
Prokaryote Eukaryote
Lack membrane-bound organelles (nucleus, mitochondria) Have membrane-bound organelles (nucleus, mitochondria)
DNA – nucleoid DNA – packed within the nucleus and organized in chromosomes
Mostly monocellular organisms (bacteria, archaea) Mostly multicellular organisms (Plants, animals, fungus)
Quite small (1–10 μm) Much bigger than prokaryotic cells (10–100 μm)

Eukaryotic Cell Structure in detail

Diagram coming soon

Plasma membrane

This is the outer layer of the cell

  • Phospholipid Bilayer
  • Embedded proteins, lipids, carbohydrates
  • Controls substances, signals into and out of the cells
  • Helps maintain cytoplasmic composition, cell volume

Functions of the membrane proteins include:

  • Receptor
  • Enzyme
  • Ion Channel
  • Gated Ion Channel
  • Cell-identify marker
  • Cell-adhesion molecule (CAM)
Cell nucleus

This is at the centre of the cell and is surrounded by the nuclear envelope. It is perforated by nuclear pores which are channels that regulate molecular traffic into and out of the organelle. A nucleus also contains Chromatin which is the genetic material of the cell (DNA) wrapped around proteins. In the centre go the nuclei is the nucleolus and this contains the genetic material for producing ribosomes.

DNA structure

Nucleotides are the building block of DNA They have:

  • a nitrogenous base
  • a pentose sugar
  • a phosphate group

Changing the base = changes the type of nucleotide. There are two types of nitrogenous bases:

  • Purines - Adenine, Guanine (2 carbon stains)
  • Pyrimidines - Cytosine, Thymine, Uracil (1 carbon stain)

To form the double helix:

  • The bases are oriented in the inner part of and form hydrogen bonds (weak) e.g. A=T, G≣C
  • The backbone is a repetition of Phosphate- Deoxyribose (covalent- strong)
Endoplasmic reticulum

Is a network of sacs directly contacted with the nucleus. These sacs are continuous & interconnected – one single lumen/ cisternal space. This allows molecules to be selectively transferred between nucleus-ER-cytoplasm. There are two types of ER:

  • Rough ER: Has ribosomes on its surface (hence its rough appearance) - it is involved in production of proteins.
  • Smooth ER: Packing the proteins in vesicles for transport, synthesis of steroids& lipids, Ca+2 storage (muscle), detox (liver).
Golgi Complex

Is a system of cisternae that synthesize carbohydrates. It receives newly synthesized proteins from the rough ER and puts the finishing touches on synthesis.

  • Modifications: cutting, splicing, addition of carbohydrate.
  • Finally packages the proteins inmembrane-bounded Golgi vesicles for delivery.
Mitochondria

These organelles are the ‘powerhouses’ of the cell. It is made up of folded membranes (cristae) inside a membrane. ATP production occurs in the inner membrane where enzymes catalyze the respiration of pyruvic acid to ATP. Their main function is the conversion of the potential energy of food molecules into ATP (“oxidative phosphorylation”, “Krebs Cycle”):

Aerobic Respiration

C6H12O6 + 6O2 + 6H2O → 12H2O + 6CO2 + (36)ATP

Lysosomes

These are the waste bins of the cell. They contain digestive enzymes and have an extremely low pH to break down foreign particles or damaged organelles.

Cytoskeleton

Collection of filaments and cylinders that provide structural support, mobility, organization:

  • Microfilaments (actin): cell movement, muscle contraction, wound healing.
  • Intermediate filaments (keratin-epidermal cells): resist stress and participate in cell-cell junctions/ anchor of neighboring cells.
  • Microtubules (tubulin): cell movements, movements of organelles within the cytoplasm, movement of chromosomes during cell division.

Tissue

Tissue is mainly comprised of cells and a matrix. The matrix is composed of fibrous proteins and, usually, a clear gel variously known as ground substance, tissue fluid, extracellular fluid (ECF), interstitial fluid, or tissue gel. In cartilage and bone it can be rubbery or stony in consistency. The ground substance contains water, gases, minerals, nutrients, wastes, and other chemicals. There are many different types of tissues, examples include:

Type Definition Locations
Epithelial Tissue composed of layers of closely spaced cells that cover organ surfaces, form glands, and serve for protection, secretion, and absorption Epidermis
Inner lining of digestive tract
Liver and other glands
Connective Tissue with more matrix than cell volume, often specialised to support, bind together, and protect organs Tendons and ligaments
Cartilage and bone
Blood
Nervous Tissue containing excitable cells specialised for rapid transmission of coded information to other cells Brain
Spinal Cord
Nerves
Muscular Tissue composed of elongated, excitable cells specialised for contraction Skeletal muscles
Heart (cardiac muscle)
Walls of viscera (smooth muscles)

Chapter 2 to be completed soon



Written by Tobias Whetton